MetPX-Sarracenia Installation

Revision Record

version:

UNKNOWN

date:

Apr 18, 2024

Do you already have it?

If sarracenia is already installed you may invoke it like with:

fractal% sr3 status
status:
Component/Config                         State        Run  Miss   Exp Retry
----------------                         -----        ---  ----   --- -----
      total running configs:   0 ( processes: 0 missing: 0 stray: 0 )
fractal%

Sarracenia can be installed system-wide or only for one user. For use by a single user installation, the python #PIP method should work, giving access to sr3 any all libraries needed for programmatic access.

For operational use, administrative access may be needed for package installation, and integration with systemd. Regardless of how it is installed, some periodic processing (on linux usually known as cron jobs) may also need to be configured.

Some environments provide sarracenia, but the installation can be incomplete, in that, some environments do not provide for libraries that sarracenia depends on. To know what features your installation has, use the features command:

fractal% sr3 features

Status:    feature:   python imports:      Description:
Installed  amqp       amqp                 can connect to rabbitmq brokers
Installed  appdirs    appdirs              place configuration and state files appropriately for platform (windows/mac/linux)
Installed  filetypes  magic                able to set content headers
Installed  ftppoll    dateparser,pytz      able to poll with ftp
Installed  humanize   humanize             humans numbers that are easier to read.
Absent     mqtt       paho.mqtt.client     cannot connect to mqtt brokers
Installed  redis      redis,redis_lock     can use redis implementations of retry and nodupe
Installed  sftp       paramiko             can use sftp or ssh based services
Installed  vip        netifaces            able to use the vip option for high availability clustering
Installed  watch      watchdog             watch directories
Installed  xattr      xattr                on linux, will store file metadata in extended attributes
MISSING    clamd      pyclamd              cannot use clamd to av scan files transferred

 state dir: /home/peter/.cache/sr3
 config dir: /home/peter/.config/sr3

fractal%

Each feature is explained, and the status is indicated. Note that plugins can also declare the extra libraries they need. Each feature depends on the python imports listed in the third column. Making those libraries available to the python environment will activate the given feature.

For example, if “paramiko” is installed, support for SFTP polls and transfers will start working.

Client Installation

The package is built for python version 3.6 or higher. On systems where they are available, debian packages are recommended. These can be obtained from the launchpad repository. If you cannot use debian packages, then consider pip packages avialable from PyPI. In both cases, the other python packages (or dependencies) needed will be installed by the package manager automatically.

Note that in some cases, the operating system does not provide all the required functionality for all features, so one can complement with pip packages, which can be installed system-wide, within a user’s environment or even within venv. as long as sr3 features reports the feature as available, it will be used.

Redhat/Suse Distros (rpm based)

Python distutils on redhat package manager based distributions does not handle dependencies with the current packaging, so one needs to manually install them. For example, on fedora 28 mandatories:

$ sudo dnf install python3-appdirs
$ sudo dnf install python3-humanize
$ sudo dnf install python3-psutil
$ sudo dnf install python3-watchdog
$ sudo dnf install python3-paramiko
$ sudo dnf install python3-xattr

Optional ones:

$ sudo dnf install python3-amqp      # optionally support rabbitmq brokers
$ sudo dnf install python3-file-magic      # optionally support content-type header in messages.
$ sudo dnf install python3-netifaces # optionally support vip directive for HA.
$ sudo dnf install python3-paho-mqtt # optionally support mqtt brokers

$ sudo dnf install python3-setuptools # needed to build rpm package.

If packages are not available, the one can substitute by using python install package (pip/pip3)

Once the dependencies are in place, one can build an RPM file using setuptools:

$ git clone https://github.com/MetPX/sarracenia
$ cd sarracenia

$ python3 setup.py bdist_rpm
$ sudo rpm -i dist/*.noarch.rpm

This procedure installs only the python application (not the C one.) No man pages nor other documentation is installed either.

The RPM file does not include systemd integration, which must currently be taken care of manually:

groupadd sarra
useradd -g sarra sarra
wget  https://github.com/MetPX/sarracenia/blob/development/debian/metpx-sr3.service
cp metpx-sr3.service /lib/systemd/system
cp metpx-sr3.service /etc/systemd/system

After this it can be enabled as per any other systemd unit.

(yes this is sad, more information here: https://github.com/MetPX/sarracenia/issues/863 )

PIP

On Windows or Linux distributions where system packages are not available or other special cases, such as if using python in virtual env, where it is more practical to install the package using pip (python install package) from http://pypi.python.org/.

It is straightforward to do that just the essentials:

$ pip install metpx-sr3

one could also add the extras:

$ pip install metpx-sr3[amqp,mqtt,vip,ftppoll,filetype]

for all the extras, there is a shortcut:

$ pip install metpx-sr3[all]

and to upgrade after the initial installation:

$ pip install metpx-sr3

  • To install server-wide on a linux server, prefix with sudo

NOTE:

* On many systems where both pythons 2 and 3 are installed, you may need to specify pip3 rather than pip.

* on Windows, in order to get the filetype feature working, one will need to manually *pip install python-magic-bin*
  see here for details: https://pypi.org/project/python-magic/

System Startup and Shutdown

If the intent is to implement a Data Pump, that is a server with a role in doing large amounts of data transfers, then the convention is to create an sarra application user, and arrange for it to be started on boot, and stopped on shutdown.

When Sarracenia is installed using a debian package:

  • the SystemD unit file is installed in the right place.

  • the sarra user is created,

If installing using python3 (pip) methods, then this file should be installed:

in the correct location. It can be installed in:

/lib/systemd/system/metpx-sr3.service

once installed, it can be activated in the normal way. It expected a sarra user to exist, which might be created like so:

groupadd sarra
useradd --system --create-home sarra

Directories should be made read/write for sara. The preferences will go in ~sarra/.config, and the state files will be in ~sarra/.cache, and the periodic processing (see next session) also be implemented.

Periodic Processing/Cron Jobs

Regardless of how it is installed, Additional periodic processing may be necessary:

  • to run sr3 sanity to ensure that appropriate processes are running.

  • to clean up old directories and avoid filling file systems.

examples:

# kill off stray process, or restart ones that might have died.
# avoiding the top of the hour or the bottom.
7,14,21,28,35,42,49,56 * * * sr3 sanity
# example directory cleaning jobs, script is included in examples/ subdirectory.
17 5,11,17,23 * * *    IPALIAS='192.168.1.27';RESULT=`/sbin/ip addr show | grep $IPALIAS|wc|awk '{print $1}'`; if [ $RESULT -eq 1 ]; then tools/old_hour_dirs.py 6 /Projects/web_root ; fi

Windows

On Windows, there are 2 (other) possible options:

Without Python

Download Sarracenia installer file from here, execute it and follow the instructions. Don’t forget to add Sarracenia’s Python directory to your PATH.

With Anaconda

Create your environment with the file suggested by this repository. Executing that command from the Anaconda Prompt should install everything:

$ conda env create -f sarracenia_env.yml

See Windows user manual for more information on how to run Sarracenia on Windows.

Packages

Debian packages and python wheels can be downloaded directly from: launchpad

Source

Source code for each module is available https://github.com/MetPX:

$ git clone https://github.com/MetPX/sarracenia sarracenia
$ cd sarracenia

Development happens on the master branch. One probably wants real release, so run git tag, and checkout the last one (the latest stable release):

$ git tag
  .
  .
  .
  v3.00.48
  v3.00.49
$ git checkout v3.00.49
$ python3 -m build --no-isolation
$ pip3 install dist/metpx_sarracenia-2.18.5b4-py3-none-any.whl

Sarrac

The C client is available in prebuilt binaries in the launchpad repositories alongside the python packages:

$ sudo add-apt-repository ppa:ssc-hpc-chp-spc/metpx
$ sudo apt-get update
$ sudo apt-get install metpx-sr3c

For any recent ubuntu version. The librabbitmq-0.8.0 has been backported in the PPA. sarrac’s dependency. For other architectures or distributions, one can build from source:

$ git clone https://github.com/MetPX/sarrac

on any linux system, as long as librabbitmq dependency is satisfied. Note that the package does not build or run on non-linux systems.